| AdjSurv.fn | Active Tag Life Adjusted Survival Model Fitting |
| atlas2flat.fn | Converts ATLAS data file to a flat file format |
| boot.L | Bootstraps observed "activation to 1st detection per site" times to get standard errors on estimated p(Li) |
| cjs.fn | Summarizes detection histories and provides Cormack-Jolly-Seber estimates with or without adjustment of potential tag-failure |
| cjs.lik | A likelihood function for unadjusted- or adjusted-for-taglife Cormack-Jolly-Seber (CJS) estimates |
| cjs.taglife.corr | Estimates the length of time a tag is active (tag activation to first detection time) |
| correct.fn | Restrains uncorrected probability estimates between 0 and 1 |
| dayhr.fn | Standardizes date-time input |
| harmonic | Estimates harmonic mean |
| mean_tt2site.fn | Estimates travel time harmonic mean |
| single.rel | Single Release ATLAS Practice File. |
| taglife.data | Taglife ATLAS Practice File. |
| thist0 | Creates a list with counts per history and corresponding matrix of unique histories |