Delta Predator Filtering Tools for Acoustic Telemetry Data

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Documentation for package ‘DPF’ version 0.0.1

Help Pages

add_aux_data Add discharge and HOR barrier information
calc_metrics Calculate metrics for filtering
deps_N_2017_smolts Example Deployment Data
deps_S_2016_smolts Example Deployment Data
dets_N_2017_smolts Example Detection Data
dets_S_2016_smolts Example Detection Data
euler_plot Euler diagram of flagged tags
find_seg_lengths Lengths of segments along a routes
get_pred_dedf Obtain reference predator detection data set and metrics
get_pred_rpca_info Title
get_pred_tag Extract tag-level predator classifcation for single tag
gmm_filter Conduct Gaussian Mixture Model analysis
hca_combine_smolt_pred_data Combine smolt and predator data
hca_filter Hierarchical cluster filter
link2flowmap Connect to Central Valley flowline map
lookup_pred_metrics Look-up function for identifying predator reference data to assist with applying a predator filter
make_TDS Make telemetry data set (TDS) object
master_predDEDF Predator data
plot_rpca_inputs Plot showing RPCA input
plot_rpca_preds Plot predator reference data as RPCA outputs
plot_rpca_results Plot RPCA outputs
PredMCmat Predator data metrics
print.TDS Generic function that limits the amount of output displayed when a 'TDS' class object is is called
rb_filter Rule-based predator filter
rb_metrics_plot Barplot of frequency with which metrics were flagged in rule-based filter
rels_N_2017_smolts Example Release Data
rels_S_2016_smolts Example Release Data
rpca_filter Conduct Robust Principle Component Analysis
summarize_firstpred Summarize the first predator classifications by site
summ_metrics Summarize metrics